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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
34
DNase-seq
10
snATAC-seq
9
single cell RNA-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
51
DNA accessibility
43
DNA binding
15
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
11
narrow histone mark
Date released
43
October, 2019
32
June, 2019
19
April, 2020
7
May, 2019
6
February, 2021
5
July, 2019
2
February, 2020
1
March, 2020
Available data
88
bam
71
bed narrowPeak
70
bigWig
64
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
114
Homo sapiens
Biosample type
115
tissue
Organ
946
pancreas
791
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
96
AMP
19
LungMap
Genome assembly (visualization)
75
GRCh38
75
hg19
Lab
96
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
HiChIP
organ_slims!
artery
BIOSAMPLE
ASSAY
115 results
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ChIP-seq
DNase-seq
snATAC-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
5
muscle of leg
7
13
1
lung
10
9
1
muscle of arm
17
gastrocnemius medialis
1
4
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