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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
36
DNase-seq
9
ATAC-seq
8
snATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
53
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Date released
32
June, 2019
10
October, 2019
8
January, 2021
6
February, 2021
5
July, 2019
3
February, 2020
1
January, 2018
Available data
49
bam
44
bed narrowPeak
44
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
65
Homo sapiens
Biosample type
56
tissue
8
primary cell
1
cell line
Organ
728
pancreas
531
connective tissue
418
adipose tissue
395
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
8
T1D
Genome assembly (visualization)
49
GRCh38
49
hg19
Lab
57
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent ontology term
assay_title!
HiChIP
ChIP-seq
BIOSAMPLE
ASSAY
65 results
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DNase-seq
ATAC-seq
snATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
muscle of arm
17
muscle of leg
13
1
tibial nerve
2
1
5
gastrocnemius medialis
1
4
tibial artery
2
1
1
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primary cell
peripheral blood mononuclear cell
8
cell line
GM12878
1
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