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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
30
ChIP-seq
26
total RNA-seq
22
ATAC-seq
1
single cell RNA-seq
Assay category
30
DNA binding
27
Transcription
22
DNA accessibility
Target of assay
44
histone
44
histone modification
27
broad histone mark
narrow histone mark
3
control
Date released
715
February, 2021
368
November, 2017
335
May, 2021
323
August, 2017
314
May, 2020
308
August, 2021
207
June, 2019
203
February, 2023
200
May, 2022
173
October, 2019
168
July, 2018
108
July, 2019
88
November, 2018
86
May, 2019
78
December, 2017
65
October, 2018
61
March, 2020
59
September, 2020
58
September, 2018
57
April, 2019
57
November, 2019
49
April, 2018
47
September, 2023
35
December, 2018
31
February, 2018
27
January, 2019
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
74
fastq
71
bam
70
bigWig
42
bed narrowPeak
26
tsv
19
bigBed narrowPeak
12
tagAlign
3
bed broadPeak
1
csv
Organism
79
Homo sapiens
Biosample type
58
primary cell
21
tissue
Organ
62
pancreas
50
epithelium
14
brain
1
adipose tissue
1
connective tissue
1
spleen
Project
79
AMP
Genome assembly (visualization)
70
GRCh38
69
hg19
Lab
78
AMP-T2D consortium
1
Stephen Parker, UMich
Audit category:
20
missing controlled_by
assay_title!
HiChIP
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
79 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
primary cell
pancreatic beta cell
10
4
pancreatic ductal cell
6
4
4
pancreatic alpha cell
10
3
pancreatic acinar cell
4
2
3
pancreatic endocrine cell
7
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tissue
brain
13
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
omental fat pad
1
+ See 1 more…
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