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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
DNA accessibility
43
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
406
November, 2017
311
August, 2017
251
October, 2019
183
May, 2021
120
May, 2019
103
February, 2021
94
December, 2017
80
April, 2019
77
November, 2018
74
October, 2018
57
August, 2021
51
May, 2020
45
March, 2020
41
May, 2022
40
May, 2024
35
December, 2018
35
July, 2019
32
September, 2018
31
June, 2019
25
January, 2019
24
February, 2018
15
November, 2019
15
October, 2017
10
November, 2020
6
February, 2023
6
September, 2017
5
January, 2018
3
October, 2022
2
December, 2019
1
August, 2018
1
March, 2019
1
March, 2023
Available data
30
bed narrowPeak
30
bigWig
24
bam
24
tagAlign
5
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
56
Homo sapiens
Biosample type
27
cell line
23
in vitro differentiated cells
4
primary cell
3
tissue
Organ
26
liver
6
epithelium
3
connective tissue
3
kidney
3
pancreas
1
adipose tissue
Project
57
AMP
Genome assembly (visualization)
33
hg19
16
GRCh38
Lab
28
AMP-T2D consortium
26
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
3
inconsistent ontology term
assay_title!
MPRA
assay_slims!
Transcription
DNA accessibility
BIOSAMPLE
ASSAY
57 results
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Clear Filters
ChIP-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
cell line
HepG2
18
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
21
adipocyte
1
osteoblast
1
primary cell
hepatocyte
4
tissue
islet of Langerhans
1
kidney
1
subcutaneous adipose tissue
1
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