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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
34
ChIP-seq
6
snATAC-seq
5
STARR-seq
4
Capture-C
3
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
Transcription
82
DNA accessibility
34
DNA binding
3
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
broad histone mark
1
RNA binding protein
Date released
356
November, 2017
229
October, 2019
213
August, 2017
210
June, 2019
152
February, 2021
151
May, 2020
141
May, 2021
140
May, 2022
130
August, 2021
111
February, 2023
87
November, 2018
79
December, 2017
62
May, 2019
55
October, 2018
49
March, 2020
43
April, 2019
43
July, 2019
35
December, 2018
35
November, 2019
29
September, 2018
21
January, 2019
20
May, 2024
16
February, 2018
16
January, 2021
13
October, 2017
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
3
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
98
bed narrowPeak
64
xls
27
bam
24
bigWig
17
tagAlign
4
bed bed3+
2
bedpe bed3+
2
hic
1
vcf
Organism
129
Homo sapiens
Biosample type
73
tissue
28
in vitro differentiated cells
26
cell line
3
primary cell
Organ
73
kidney
24
liver
5
connective tissue
5
epithelium
3
pancreas
1
adipose tissue
Project
130
AMP
Genome assembly (visualization)
83
GRCh38
38
hg19
Lab
71
Katalin Susztak, Upenn
30
AMP-T2D consortium
25
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
MPRA
assay_slims!
Transcription
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
130 results
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Clear Filters
ATAC-seq
ChIP-seq
snATAC-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
kidney
64
6
1
islet of Langerhans
1
subcutaneous adipose tissue
1
in vitro differentiated cells
neural progenitor cell
10
14
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
17
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
3
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