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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
134
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
pCHi-C
2
RRBS
Assay category
Transcription
134
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
17
transcription factor
11
RNA binding protein
Date released
57
April, 2019
40
May, 2024
35
February, 2023
35
June, 2019
21
May, 2019
14
February, 2021
14
July, 2019
6
October, 2019
2
March, 2020
Available data
191
bed narrowPeak
154
bigWig
141
bam
94
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
224
Homo sapiens
Biosample type
201
tissue
14
cell line
9
primary cell
Organ
595
liver
466
pancreas
323
epithelium
260
brain
227
kidney
224
heart
198
connective tissue
168
vasculature
162
blood vessel
115
limb
96
bone element
88
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
38
eye
38
nerve
24
spleen
23
embryo
22
vein
18
ureter
12
skeleton
10
lung
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
pericardium
1
skin of body
Project
224
AMP
Genome assembly (visualization)
196
GRCh38
118
hg19
Lab
184
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
Audit category:
6
inconsistent ontology term
assay_title!
MPRA
pCHi-C
assay_slims!
Transcription
BIOSAMPLE
ASSAY
224 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
RRBS
tissue
heart left ventricle
35
2
3
4
1
1
coronary artery
5
36
2
left cardiac atrium
40
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
6
8
primary cell
cardiac fibroblast
5
3
1
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