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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
47
ATAC-seq
30
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
2
RRBS
Assay category
Transcription
117
DNA binding
77
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
97
histone
97
histone modification
57
broad histone mark
40
narrow histone mark
20
control
transcription factor
11
RNA binding protein
Date released
52
April, 2019
35
February, 2023
35
May, 2024
34
June, 2019
19
May, 2019
14
July, 2019
10
February, 2021
6
October, 2019
5
March, 2020
Available data
174
bed narrowPeak
137
bigWig
129
bam
86
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
3
tsv
2
tagAlign
Organism
210
Homo sapiens
Biosample type
192
tissue
10
cell line
8
primary cell
Organ
448
pancreas
314
epithelium
260
liver
259
brain
219
kidney
210
heart
163
connective tissue
160
vasculature
155
blood vessel
115
limb
97
bone element
87
musculature of body
78
artery
73
adipose tissue
41
eye
38
nerve
22
vein
20
embryo
19
spleen
18
blood
18
bodily fluid
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
210
AMP
Genome assembly (visualization)
179
GRCh38
106
hg19
Lab
175
AMP-T2D consortium
35
Patrick T. Ellinor, Broad
Audit category:
5
inconsistent ontology term
assay_title!
MPRA
assay_slims!
Transcription
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
210 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
tissue
coronary artery
4
36
2
heart left ventricle
30
2
3
4
1
1
1
left cardiac atrium
35
1
heart
14
18
1
1
heart right ventricle
13
1
2
1
1
+ See 2 more…
cell line
smooth muscle cell of the coronary artery
2
8
primary cell
cardiac fibroblast
4
3
1
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