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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
61
ChIP-seq
6
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
61
DNA binding
8
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
narrow histone mark
5
RNA binding protein
Date released
386
February, 2021
45
August, 2017
23
October, 2018
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
441
bam
423
bigWig
401
tsv
43
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
5
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
bedpe bed3+
Organism
477
Homo sapiens
Biosample type
476
tissue
2
primary cell
Organ
866
pancreas
729
liver
650
connective tissue
478
adipose tissue
470
epithelium
350
heart
339
kidney
208
vasculature
203
blood vessel
169
brain
159
bone element
135
artery
107
limb
81
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
23
spleen
20
lung
18
ureter
16
skeleton
15
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
478
AMP
Genome assembly (visualization)
424
hg19
423
GRCh38
Lab
478
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
MPRA
files.file_type!
bedpe bed3+
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
478 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
1
3
3
1
subcutaneous abdominal adipose tissue
25
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
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primary cell
mesenchymal stem cell of adipose
1
1
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