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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
DNase-seq
28
ChIP-seq
Assay category
117
DNA accessibility
28
DNA binding
Target of assay
28
histone
28
histone modification
16
broad histone mark
12
narrow histone mark
Date released
109
June, 2019
20
August, 2017
9
October, 2019
6
November, 2017
1
November, 2020
Available data
3248
bam
3038
bigWig
1634
bed narrowPeak
1576
tsv
fastq
938
bigBed narrowPeak
398
tagAlign
244
bed broadPeak
207
bigBed broadPeak
195
bed bed3+
153
zippedFastqFolder
98
txt
32
bed bedMethyl
32
bigBed bedMethyl
23
bedpe bed3+
22
hic
12
bed bed3
7
bed bedgraph
5
hdf5
4
tar
3
cool
3
csv
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
145
Homo sapiens
Biosample type
125
tissue
19
primary cell
1
cell line
Organ
kidney
46
musculature of body
36
brain
36
limb
30
heart
18
epithelium
18
ureter
13
vasculature
11
blood vessel
11
pancreas
8
connective tissue
4
artery
4
eye
4
vein
2
adipose tissue
2
liver
2
nerve
Project
145
AMP
Genome assembly (visualization)
129
hg19
122
GRCh38
Lab
145
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_title!
MPRA
files.file_type!
fastq
organ_slims!
kidney
BIOSAMPLE
ASSAY
145 results
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Clear Filters
DNase-seq
ChIP-seq
tissue
heart
18
muscle of arm
17
muscle of leg
13
skeletal muscle tissue
13
brain
12
+ See 33 more…
primary cell
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
astrocyte of the cerebellum
1
astrocyte of the hippocampus
1
brain microvascular endothelial cell
1
+ See 9 more…
cell line
Panc1
1
See all biosamples
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