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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
Assay category
43
DNA binding
Target of assay
22
histone
22
histone modification
21
transcription factor
13
chromatin remodeller
13
narrow histone mark
9
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
21
November, 2017
16
August, 2017
December, 2017
5
November, 2018
February, 2018
1
October, 2018
Available data
43
bam
43
bigWig
43
fastq
41
bed narrowPeak
31
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
tagAlign
4
bed bed3+
Organism
43
Homo sapiens
Biosample type
26
cell line
6
in vitro differentiated cells
6
tissue
5
primary cell
Organ
27
liver
9
pancreas
6
connective tissue
4
epithelium
Project
43
AMP
Genome assembly (visualization)
43
hg19
39
GRCh38
Lab
43
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
43
inconsistent control read length
9
inconsistent control run_type
4
inconsistent assembly
assay_title!
MPRA
month_released!
December, 2017
February, 2018
BIOSAMPLE
ASSAY
43 results
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ChIP-seq
cell line
HepG2
26
in vitro differentiated cells
adipocyte
6
tissue
pancreas
4
body of pancreas
1
liver
1
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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