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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
126
ChIP-seq
89
total RNA-seq
9
WGBS
5
RRBS
2
ATAC-seq
2
DNase-seq
1
FAIRE-seq
Assay category
126
DNA binding
89
Transcription
14
DNA methylation
5
DNA accessibility
Target of assay
124
histone modification
123
histone
73
broad histone mark
narrow histone mark
29
control
23
transcription factor
2
RNA binding protein
Date released
545
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
66
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
21
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
157
fastq
152
bam
152
bigWig
89
tsv
42
bed narrowPeak
39
tagAlign
20
bed bed3+
16
bed broadPeak
16
bigBed narrowPeak
5
bed bedMethyl
5
bigBed bedMethyl
Organism
229
Homo sapiens
Biosample type
234
tissue
52
in vitro differentiated cells
37
primary cell
Organ
129
pancreas
45
adipose tissue
45
connective tissue
41
liver
19
musculature of body
Project
234
AMP
Genome assembly (visualization)
154
hg19
140
GRCh38
Lab
234
AMP-T2D consortium
Audit category:
19
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
assay_title!
MPRA
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
234 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
ATAC-seq
DNase-seq
FAIRE-seq
tissue
islet of Langerhans
28
89
1
1
liver
35
3
1
subcutaneous abdominal adipose tissue
25
3
skeletal muscle tissue
15
4
white adipose tissue
12
pancreas
10
adipose tissue
1
3
right lobe of liver
1
1
subcutaneous adipose tissue
1
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