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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
162
ChIP-seq
89
total RNA-seq
5
ATAC-seq
4
DNase-seq
2
WGBS
1
FAIRE-seq
Assay category
162
DNA binding
89
Transcription
10
DNA accessibility
2
DNA methylation
Target of assay
86
histone modification
85
histone
47
transcription factor
45
narrow histone mark
39
broad histone mark
29
control
8
RNA binding protein
3
chromatin remodeller
Date released
564
February, 2021
325
November, 2017
263
August, 2017
233
May, 2020
218
June, 2019
201
October, 2019
187
May, 2021
164
July, 2018
120
May, 2019
94
December, 2017
87
November, 2018
82
July, 2019
79
April, 2019
76
October, 2018
72
September, 2018
59
November, 2019
49
April, 2018
39
February, 2018
34
December, 2018
30
January, 2019
25
August, 2021
24
May, 2022
16
March, 2020
11
September, 2017
8
October, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
1
March, 2019
Available data
287
fastq
282
bam
272
bigWig
142
bed narrowPeak
89
tsv
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
Organism
263
Homo sapiens
Biosample type
163
tissue
54
in vitro differentiated cells
46
primary cell
Organ
161
pancreas
71
connective tissue
29
epithelium
26
liver
17
adipose tissue
Project
263
AMP
Genome assembly (visualization)
234
hg19
232
GRCh38
Lab
263
AMP-T2D consortium
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
assay_title!
MPRA
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
263 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
FAIRE-seq
tissue
islet of Langerhans
22
89
1
1
liver
25
white adipose tissue
12
pancreas
7
adipose tissue
2
2
+ See 2 more…
in vitro differentiated cells
adipocyte
53
1
primary cell
pancreatic alpha cell
13
1
pancreatic beta cell
13
1
pancreatic endocrine cell
12
skeletal muscle myoblast
3
2
pancreatic acinar cell
1
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