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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
31
total RNA-seq
24
ChIP-seq
22
single cell RNA-seq
3
ATAC-seq
Assay category
53
Transcription
24
DNA binding
3
DNA accessibility
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
324
November, 2017
287
August, 2017
94
December, 2017
88
November, 2018
76
February, 2023
73
September, 2018
60
October, 2018
50
July, 2018
45
February, 2021
44
April, 2018
41
September, 2020
39
February, 2018
35
December, 2018
30
January, 2019
24
May, 2022
17
October, 2017
11
September, 2017
7
August, 2020
5
January, 2018
4
August, 2018
3
June, 2018
1
March, 2019
Available data
80
fastq
39
bam
34
bigWig
19
zippedFastqFolder
16
bed narrowPeak
15
tsv
Organism
80
Homo sapiens
Biosample type
41
primary cell
39
in vitro differentiated cells
Organ
19
epithelium
19
pancreas
13
embryo
Project
41
HPAP
39
AMP
Genome assembly (visualization)
34
GRCh38
31
hg19
Lab
41
Klaus Kaestner, Upenn
39
AMP-T2D consortium
Audit category:
2
inconsistent control read length
assay_title!
MPRA
BIOSAMPLE
ASSAY
80 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
primary cell
Langerhans cell
22
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
in vitro differentiated cells
pancreatic endoderm
4
9
definitive endodermal cell
2
3
embryonic stem cell
2
3
endocrine cell
2
3
posterior foregut
2
3
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