Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
981
total RNA-seq
272
ChIP-seq
185
ATAC-seq
116
single cell RNA-seq
110
DNase-seq
85
RNA microarray
27
WGBS
25
pCHi-C
22
snATAC-seq
15
Hi-C
15
small RNA-seq
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
Assay category
1112
Transcription
320
DNA accessibility
272
DNA binding
37
DNA methylation
15
3D chromatin structure
Target of assay
histone modification
607
histone
314
narrow histone mark
293
broad histone mark
181
control
93
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
537
February, 2021
166
May, 2020
160
August, 2017
120
July, 2018
101
August, 2021
95
February, 2023
95
June, 2019
73
July, 2019
72
October, 2019
66
May, 2022
44
October, 2018
43
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
May, 2019
26
November, 2018
25
February, 2020
19
April, 2020
15
April, 2019
12
November, 2017
11
October, 2017
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2023
Available data
1363
bam
1179
bigWig
1064
tsv
331
bed narrowPeak
303
fastq
180
bigBed narrowPeak
125
bed bed3+
110
bed broadPeak
108
bigBed broadPeak
95
txt
52
tagAlign
24
bed bedMethyl
24
bigBed bedMethyl
10
bedpe bed3+
10
hic
5
bed bed3
1
bedpe
1
csv
Organism
1867
Homo sapiens
Biosample type
1870
tissue
825
primary cell
604
cell line
282
in vitro differentiated cells
8
stem cell
Organ
514
connective tissue
456
adipose tissue
432
pancreas
291
liver
kidney
218
heart
158
bone element
81
brain
79
blood vessel
79
vasculature
73
limb
57
musculature of body
54
eye
53
artery
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
15
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1822
AMP
29
T1D
19
LungMap
Genome assembly (visualization)
1245
hg19
1220
GRCh38
Lab
1742
AMP-T2D consortium
52
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
19
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
89
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
18
missing controlled_by
assay_title!
MPRA
organ_slims!
kidney
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
1870 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
small RNA-seq
RRBS
MeRIP-seq
FAIRE-seq
tissue
islet of Langerhans
292
20
68
6
1
4
7
3
1
4
1
adipose tissue
382
1
3
3
1
liver
167
80
20
1
2
3
1
1
1
1
bone element
84
bone tissue
58
+ See 103 more…
See all biosamples
Download