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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
752
ChIP-seq
423
total RNA-seq
231
ATAC-seq
174
DNase-seq
168
single cell RNA-seq
28
snATAC-seq
24
pCHi-C
23
WGBS
15
Hi-C
13
small RNA-seq
10
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
RNA microarray
Assay category
752
DNA binding
604
Transcription
437
DNA accessibility
33
DNA methylation
15
3D chromatin structure
Target of assay
558
histone
558
histone modification
280
narrow histone mark
278
broad histone mark
141
control
55
transcription factor
26
RNA binding protein
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
February, 2021
236
October, 2019
230
August, 2017
229
August, 2021
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
74
October, 2018
69
July, 2019
47
September, 2023
40
May, 2021
40
May, 2024
40
November, 2019
37
March, 2020
26
May, 2022
24
February, 2020
23
October, 2017
19
April, 2020
19
November, 2018
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1167
bam
1063
bigWig
863
bed narrowPeak
512
bigBed narrowPeak
470
tsv
294
fastq
210
bed broadPeak
199
bed bed3+
173
bigBed broadPeak
168
tagAlign
68
txt
64
xls
24
bed bedMethyl
24
bigBed bedMethyl
10
hic
9
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1863
Homo sapiens
Biosample type
1872
tissue
1026
primary cell
353
in vitro differentiated cells
166
cell line
10
stem cell
Organ
505
pancreas
liver
313
heart
291
kidney
265
brain
133
blood vessel
133
vasculature
116
limb
103
connective tissue
102
adipose tissue
82
musculature of body
73
artery
56
eye
43
nerve
25
spleen
20
lung
18
ureter
15
epithelium
8
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
1775
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
1169
GRCh38
1035
hg19
Lab
1560
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
7
inconsistent ontology term
4
audit script error
Audit category:
26
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
assay_title!
MPRA
organ_slims!
liver
month_released!
February, 2021
BIOSAMPLE
ASSAY
1872 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
RNA microarray
tissue
islet of Langerhans
71
298
68
1
7
4
3
1
1
4
kidney
27
49
75
13
59
6
1
1
1
heart left ventricle
35
3
2
3
18
1
4
1
1
left cardiac atrium
40
1
18
body of pancreas
35
3
4
4
2
2
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