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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
28
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
28
DNA binding
5
DNA accessibility
3
DNA methylation
Target of assay
24
histone
24
histone modification
16
broad histone mark
8
narrow histone mark
4
control
Date released
386
February, 2021
31
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
442
bam
425
bigWig
401
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
438
Homo sapiens
Biosample type
437
tissue
2
primary cell
Organ
561
connective tissue
463
pancreas
439
adipose tissue
387
heart
354
kidney
260
epithelium
252
liver
224
vasculature
221
blood vessel
159
bone element
155
brain
135
artery
122
limb
79
musculature of body
61
eye
43
nerve
22
vein
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
439
AMP
Genome assembly (visualization)
404
hg19
401
GRCh38
Lab
439
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
MPRA
files.file_type!
fastq
tagAlign
BIOSAMPLE
ASSAY
439 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous abdominal adipose tissue
28
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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