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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
ChIP-seq
4
ATAC-seq
3
WGBS
1
DNase-seq
1
RNA microarray
1
total RNA-seq
Assay category
36
DNA binding
5
DNA accessibility
3
DNA methylation
1
Transcription
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
39
August, 2017
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
442
bam
425
bigWig
tsv
fastq
13
bed narrowPeak
10
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
45
Homo sapiens
Biosample type
46
tissue
Organ
330
kidney
258
pancreas
239
brain
225
heart
211
epithelium
162
vasculature
159
blood vessel
157
liver
115
limb
108
connective tissue
101
bone element
85
musculature of body
83
artery
56
eye
46
adipose tissue
38
nerve
22
vein
19
lung
18
ureter
16
skeleton
9
blood
9
bodily fluid
4
gonad
4
ovary
2
pituitary gland
1
bone marrow
1
lymph node
1
pericardium
1
skin of body
1
thymus
Project
46
AMP
Genome assembly (visualization)
7
hg19
3
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
MPRA
files.file_type!
fastq
tsv
BIOSAMPLE
ASSAY
46 results
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Clear Filters
ChIP-seq
ATAC-seq
WGBS
DNase-seq
RNA microarray
total RNA-seq
tissue
subcutaneous abdominal adipose tissue
36
3
adipose tissue
3
1
adipose tissue(adipose white tissue)
1
omental fat pad
1
subcutaneous adipose tissue
1
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