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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
36
ChIP-seq
3
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
36
DNA binding
4
DNA accessibility
3
DNA methylation
Target of assay
31
histone
31
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
39
August, 2017
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
October, 2019
Available data
442
bam
424
bigWig
401
tsv
fastq
13
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
6
bed bed3+
3
bed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
Organism
445
Homo sapiens
Biosample type
444
tissue
2
primary cell
Organ
579
connective tissue
457
pancreas
446
adipose tissue
385
heart
324
kidney
319
liver
232
epithelium
183
vasculature
180
blood vessel
179
brain
159
bone element
115
artery
94
musculature of body
53
limb
40
eye
20
lung
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
446
AMP
Genome assembly (visualization)
404
hg19
401
GRCh38
Lab
446
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
MPRA
files.file_type!
fastq
month_released!
October, 2019
BIOSAMPLE
ASSAY
446 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
1
1
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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