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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
5
ChIP-seq
4
ATAC-seq
3
WGBS
3
small RNA-seq
1
DNase-seq
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
5
DNA accessibility
5
DNA binding
3
DNA methylation
Target of assay
31
histone
histone modification
20
broad histone mark
11
narrow histone mark
5
control
Date released
386
February, 2021
12
July, 2019
8
August, 2017
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2019
1
October, 2019
Available data
441
bam
423
bigWig
401
tsv
fastq
11
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
415
Homo sapiens
Biosample type
414
tissue
2
primary cell
Organ
531
connective tissue
424
pancreas
416
adipose tissue
324
kidney
296
heart
268
liver
225
epithelium
161
vasculature
159
bone element
158
blood vessel
121
artery
88
brain
73
limb
61
musculature of body
58
eye
20
lung
19
nerve
18
ureter
16
skeleton
10
embryo
9
blood
9
bodily fluid
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
416
AMP
Genome assembly (visualization)
404
hg19
401
GRCh38
Lab
416
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_title!
MPRA
files.file_type!
fastq
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
416 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
RNA microarray
pCHi-C
tissue
adipose tissue
382
3
1
subcutaneous adipose tissue
7
1
1
subcutaneous abdominal adipose tissue
5
3
omental fat pad
5
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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