Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
402
total RNA-seq
41
ChIP-seq
18
ATAC-seq
6
WGBS
3
small RNA-seq
2
DNase-seq
2
pCHi-C
1
RNA microarray
Assay category
405
Transcription
41
DNA binding
20
DNA accessibility
6
DNA methylation
Target of assay
histone
32
histone modification
24
control
20
broad histone mark
17
transcription factor
12
narrow histone mark
5
RNA binding protein
Date released
394
February, 2021
25
August, 2017
23
October, 2018
12
July, 2019
9
February, 2023
2
February, 2020
1
August, 2018
1
August, 2021
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
449
bam
423
bigWig
401
tsv
43
fastq
19
bed narrowPeak
9
bigBed narrowPeak
6
bed bed3+
4
bed bed3
4
txt
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
2
bigBed broadPeak
1
bedpe bed3+
1
tagAlign
Organism
474
Homo sapiens
Biosample type
472
tissue
2
primary cell
1
in vitro differentiated cells
Organ
795
pancreas
689
liver
606
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
475
AMP
Genome assembly (visualization)
436
hg19
431
GRCh38
Lab
475
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
MPRA
target.investigated_as!
histone
BIOSAMPLE
ASSAY
475 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
WGBS
small RNA-seq
DNase-seq
pCHi-C
RNA microarray
tissue
adipose tissue
382
1
3
3
1
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
1
2
white adipose tissue
12
subcutaneous abdominal adipose tissue
5
3
+ See 14 more…
primary cell
mesenchymal stem cell of adipose
1
1
in vitro differentiated cells
white fat cell
1
See all biosamples
Download