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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
11
ChIP-seq
1
RRBS
Assay category
57
Transcription
DNA accessibility
11
DNA binding
1
DNA methylation
Target of assay
5
transcription factor
4
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
Date released
58
February, 2021
5
July, 2019
5
June, 2019
1
May, 2021
Available data
68
bam
64
bigWig
57
tsv
7
bed narrowPeak
6
tagAlign
3
bigBed narrowPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
69
Homo sapiens
Biosample type
tissue
58
cell line
10
primary cell
1
in vitro differentiated cells
Organ
426
liver
392
epithelium
344
pancreas
111
connective tissue
88
vasculature
84
blood vessel
69
heart
60
artery
60
blood
60
bodily fluid
42
kidney
37
embryo
19
vein
16
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
69
AMP
Genome assembly (visualization)
65
hg19
64
GRCh38
Lab
69
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
assay_title!
MeRIP-seq
assay_slims!
DNA accessibility
biosample_type!
tissue
BIOSAMPLE
ASSAY
69 results
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total RNA-seq
ChIP-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
primary cell
cardiac fibroblast
5
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
in vitro differentiated cells
cardiac fibroblast
1
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