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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
130
total RNA-seq
84
RNA microarray
42
ATAC-seq
9
pCHi-C
9
single cell RNA-seq
MeRIP-seq
5
Hi-C
4
DNase-seq
2
Capture-C
2
RRBS
1
STARR-seq
Assay category
139
Transcription
DNA binding
46
DNA accessibility
5
3D chromatin structure
2
DNA methylation
Date released
128
February, 2021
86
May, 2021
16
March, 2020
11
February, 2023
11
October, 2019
9
November, 2019
8
May, 2020
6
July, 2018
4
June, 2019
3
August, 2021
2
December, 2019
2
July, 2019
1
February, 2020
1
June, 2018
Available data
153
bam
150
tsv
145
bigWig
85
txt
16
bed narrowPeak
7
bedpe bed3+
7
fastq
6
bed bed3+
5
hic
4
bed broadPeak
4
bigBed broadPeak
4
bigBed narrowPeak
2
bed bedMethyl
2
bigBed bedMethyl
2
ibed
1
bed bedgraph
Organism
288
Homo sapiens
Biosample type
108
in vitro differentiated cells
89
tissue
61
cell line
29
primary cell
1
stem cell
Organ
84
bone element
60
epithelium
60
pancreas
8
connective tissue
7
kidney
2
embryo
2
heart
1
adipose tissue
1
brain
1
limb
1
liver
1
musculature of body
1
stomach
1
urinary bladder
1
vasculature
Project
281
AMP
7
T1D
Genome assembly (visualization)
167
hg19
149
GRCh38
Lab
281
AMP-T2D consortium
5
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
288
inconsistent ontology term
42
audit script error
1
inconsistent replicate
assay_title!
MeRIP-seq
assay_slims!
DNA binding
BIOSAMPLE
ASSAY
288 results
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total RNA-seq
RNA microarray
ATAC-seq
pCHi-C
single cell RNA-seq
Hi-C
DNase-seq
Capture-C
RRBS
STARR-seq
in vitro differentiated cells
cardiomyocytes
59
cardiac precursors (cardiac muscle cell)
19
1
1
cardiomyocytes (cardiac muscle cell)
3
1
2
2
2
Pancreatic progenitors (progenitor cell of endocrine pancreas)
5
immature adipocyte
2
2
+ See 7 more…
tissue
bone element
84
adipose tissue(adipose white tissue)
1
bladder (urinary bladder)
1
cerebellum (Hemisphere)
1
gastric (mucosa of stomach)
1
+ See 1 more…
cell line
EndoC_BH1
33
19
1
2
RCC 7860 vector
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 VHL
1
+ See 1 more…
primary cell
naive B cel
2
2
1
central memory CD8-positive, alpha-beta T cell
2
2
gabaergic neuron
3
microglial cell/astrocyte
3
cardiac fibroblast
1
1
+ See 8 more…
stem cell
mesenchymal stem cell
1
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