Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
531
ATAC-seq
212
DNase-seq
87
RNA microarray
84
snATAC-seq
75
WGBS
57
pCHi-C
34
Hi-C
21
RRBS
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
75
DNA methylation
Date released
41
May, 2022
12
July, 2019
9
August, 2017
7
November, 2018
6
February, 2021
1
February, 2023
Available data
41
zippedFastqFolder
18
bam
17
bed bedMethyl
17
bigBed bedMethyl
17
bigWig
17
fastq
6
tsv
Organism
75
Homo sapiens
Biosample type
47
primary cell
27
tissue
2
cell line
Organ
52
pancreas
48
epithelium
8
heart
6
adipose tissue
6
connective tissue
5
liver
2
blood vessel
2
spleen
2
vasculature
1
limb
1
musculature of body
Project
47
HPAP
29
AMP
Genome assembly (visualization)
17
GRCh38
Lab
47
Klaus Kaestner, Upenn
29
AMP-T2D consortium
assay_title!
MeRIP-seq
assay_slims!
Transcription
BIOSAMPLE
ASSAY
76 results
search-icon
table-tab-icon
Clear Filters
WGBS
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
31
pancreatic beta cell
16
tissue
heart left ventricle
4
adipose tissue
3
liver
3
subcutaneous abdominal adipose tissue
3
aorta
2
+ See 8 more…
cell line
EndoC_BH1
1
HepG2
1
See all biosamples
Download