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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
907
ChIP-seq
87
RNA microarray
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
907
DNA binding
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
628
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
185
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
200
October, 2019
190
August, 2017
115
May, 2019
87
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
50
May, 2020
48
December, 2017
40
May, 2024
29
March, 2020
22
July, 2019
16
November, 2018
15
October, 2017
7
December, 2018
7
January, 2019
6
September, 2017
3
August, 2021
2
December, 2019
1
March, 2019
1
May, 2021
1
November, 2019
Available data
739
bam
631
bigWig
595
bed narrowPeak
377
bigBed narrowPeak
238
tagAlign
233
fastq
84
txt
35
bed broadPeak
28
bed bed3+
25
bed bedMethyl
25
bigBed bedMethyl
25
tsv
11
hic
10
bedpe bed3+
1
bedpe
1
tagAlign bed3+
Organism
1068
Homo sapiens
Biosample type
1076
tissue
510
cell line
364
primary cell
213
in vitro differentiated cells
8
stem cell
Organ
212
brain
162
liver
138
heart
128
pancreas
84
bone element
82
connective tissue
81
adipose tissue
77
blood vessel
77
vasculature
71
limb
41
musculature of body
35
nerve
34
kidney
28
artery
23
spleen
6
eye
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
pituitary gland
1
small intestine
1
stomach
1
urinary bladder
Project
1073
AMP
3
T1D
Genome assembly (visualization)
606
GRCh38
549
hg19
Lab
1032
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Kyle Gaulton, UCSD
Audit category:
88
inconsistent ontology term
27
inconsistent control
2
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
MeRIP-seq
assay_slims!
Transcription
DNA accessibility
BIOSAMPLE
ASSAY
1076 results
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Clear Filters
ChIP-seq
RNA microarray
WGBS
pCHi-C
Hi-C
RRBS
snDrop-seq
tissue
liver
145
3
1
1
1
bone element
84
islet of Langerhans
71
4
3
1
heart left ventricle
35
4
1
1
1
left cardiac atrium
40
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