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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
Assay category
33
DNA binding
Target of assay
18
histone
18
histone modification
15
transcription factor
10
narrow histone mark
8
broad histone mark
7
chromatin remodeller
1
RNA binding protein
Date released
November, 2017
16
August, 2017
9
December, 2017
5
November, 2018
2
February, 2018
1
October, 2018
Available data
33
bam
33
bed narrowPeak
33
bigWig
33
fastq
12
bigBed narrowPeak
8
bed bed3+
Organism
33
Homo sapiens
Biosample type
17
in vitro differentiated cells
6
tissue
5
cell line
5
primary cell
stem cell
Organ
9
pancreas
6
connective tissue
6
liver
5
epithelium
3
embryo
Project
33
AMP
Genome assembly (visualization)
33
GRCh38
33
hg19
Lab
33
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
33
inconsistent control read length
5
inconsistent control run_type
4
inconsistent assembly
assay_title!
MeRIP-seq
biosample_type!
stem cell
month_released!
November, 2017
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
in vitro differentiated cells
adipocyte
6
definitive endodermal cell
4
Posterior foregut
2
pancreatic endoderm
2
primitive gut cell
2
+ See 1 more…
tissue
pancreas
4
body of pancreas
1
liver
1
cell line
HepG2
5
primary cell
pancreatic alpha cell
2
pancreatic beta cell
2
skeletal muscle myoblast
1
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