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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
907
ChIP-seq
260
ATAC-seq
178
DNase-seq
174
single cell RNA-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
MeRIP-seq
3
snDrop-seq
Assay category
1037
Transcription
260
DNA accessibility
Date released
452
February, 2021
143
May, 2020
120
July, 2018
114
August, 2021
92
February, 2023
91
August, 2017
64
May, 2022
39
May, 2021
39
November, 2019
38
October, 2019
37
July, 2019
25
February, 2020
12
May, 2023
11
March, 2020
8
October, 2017
6
April, 2018
4
March, 2019
2
January, 2018
Available data
971
bam
944
bigWig
932
tsv
208
bed narrowPeak
132
fastq
64
xls
59
txt
5
bed bed3
3
bigBed narrowPeak
2
bed broadPeak
Organism
1297
Homo sapiens
Biosample type
1297
tissue
447
primary cell
178
in vitro differentiated cells
142
cell line
Organ
461
connective tissue
403
adipose tissue
351
pancreas
191
liver
125
kidney
74
bone element
54
heart
47
eye
45
blood vessel
45
vasculature
39
artery
21
brain
16
skeleton
15
limb
14
epithelium
6
musculature of body
6
nerve
1
pituitary gland
1
skin of body
1
spinal cord
1
spleen
Project
1279
AMP
18
T1D
Genome assembly (visualization)
1060
GRCh38
1024
hg19
Lab
1086
AMP-T2D consortium
124
Katalin Susztak, Upenn
41
Kyle Gaulton, UCSD
40
Karen Mohlke, UNC
2
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
2
inconsistent ontology term
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
1297 results
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total RNA-seq
ATAC-seq
tissue
adipose tissue
382
3
islet of Langerhans
298
68
liver
167
20
kidney
49
75
bone tissue
58
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