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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
376
ATAC-seq
323
ChIP-seq
227
single cell RNA-seq
151
total RNA-seq
87
RNA microarray
57
snATAC-seq
56
pCHi-C
50
WGBS
28
Hi-C
17
RRBS
MeRIP-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
DNase-seq
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
151
Transcription
Date released
59
August, 2021
25
February, 2020
20
May, 2022
17
February, 2023
14
October, 2019
7
May, 2021
4
July, 2018
2
March, 2020
2
May, 2020
1
May, 2023
Available data
1321
tsv
1288
bam
bigWig
fastq
59
txt
2
bed bed3+
Organism
151
Homo sapiens
Biosample type
130
tissue
9
cell line
9
in vitro differentiated cells
3
primary cell
Organ
49
kidney
30
liver
19
eye
14
pancreas
12
brain
7
connective tissue
4
bone element
4
skeleton
3
adipose tissue
3
blood vessel
3
heart
3
limb
3
vasculature
2
artery
2
epithelium
2
musculature of body
1
nerve
1
spinal cord
Project
144
AMP
7
T1D
Genome assembly (visualization)
1
GRCh38
1
hg19
Lab
61
AMP-T2D consortium
49
Katalin Susztak, Upenn
20
Karen Mohlke, UNC
11
Kyle Gaulton, UCSD
10
Bing Ren, UCSD
Audit category:
3
inconsistent ontology term
assay_title!
MeRIP-seq
files.file_type!
bigWig
fastq
BIOSAMPLE
ASSAY
151 results
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total RNA-seq
tissue
kidney
49
islet of Langerhans
26
liver
20
retina
3
pigmented layer of retina
2
+ See 30 more…
cell line
HepG2
9
in vitro differentiated cells
embryonic stem cell
5
immature adipocyte
2
adipocyte
1
preadipocyte
1
primary cell
monocyte
1
naive thymus-derived CD4-positive, alpha-beta T cell
1
neutrophil
1
See all biosamples
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