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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
single cell RNA-seq
13
ChIP-seq
10
ATAC-seq
10
total RNA-seq
5
STARR-seq
4
Capture-C
2
Hi-C
1
RNA microarray
1
whole genome sequencing assay
Assay category
108
Transcription
13
DNA binding
10
DNA accessibility
2
3D chromatin structure
1
DNA sequencing
Target of assay
12
control
1
broad histone mark
1
histone
1
histone modification
Date released
202
February, 2023
180
May, 2022
164
February, 2021
144
August, 2021
139
August, 2017
107
October, 2019
96
May, 2021
81
May, 2020
72
November, 2017
56
September, 2020
47
September, 2023
44
March, 2020
30
November, 2019
29
October, 2018
25
February, 2020
23
July, 2019
23
May, 2019
22
December, 2017
19
April, 2020
16
January, 2021
15
April, 2019
9
October, 2017
8
February, 2018
8
June, 2019
8
November, 2018
6
September, 2017
5
December, 2018
5
December, 2019
5
March, 2019
5
March, 2023
4
January, 2019
4
July, 2018
4
October, 2022
1
August, 2018
1
August, 2022
1
May, 2023
1
November, 2020
1
September, 2018
Available data
123
tsv
49
bam
bigWig
42
bed narrowPeak
24
tagAlign
5
bed bed3+
2
bedpe bed3+
1
hic
1
vcf
Organism
143
Homo sapiens
Biosample type
101
tissue
22
cell line
20
in vitro differentiated cells
1
primary cell
Organ
92
heart
18
liver
6
blood vessel
6
vasculature
4
pancreas
3
connective tissue
3
epithelium
2
artery
2
kidney
1
adipose tissue
Project
144
AMP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
Katalin Susztak, Upenn
120
AMP-T2D consortium
22
Bing Ren, UCSD
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
assay_title!
MeRIP-seq
files.file_type!
bigWig
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
144 results
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single cell RNA-seq
ChIP-seq
ATAC-seq
total RNA-seq
STARR-seq
Capture-C
Hi-C
RNA microarray
whole genome sequencing assay
tissue
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
aorta
4
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cell line
HepG2
4
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
8
10
adipocyte
1
osteoblast
1
primary cell
hepatocyte
1
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