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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
12
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
12
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
9
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
Available data
130
bam
bigWig
90
bed narrowPeak
68
tsv
40
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
69
Homo sapiens
Biosample type
52
tissue
10
cell line
7
primary cell
Organ
312
pancreas
222
kidney
216
epithelium
169
liver
163
heart
114
connective tissue
101
bone element
70
vasculature
69
blood vessel
66
adipose tissue
61
brain
55
eye
54
artery
30
limb
27
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
69
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
69
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
MeRIP-seq
files.file_type!
bigWig
month_released!
May, 2019
BIOSAMPLE
ASSAY
69 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
1
aorta
4
1
1
1
tibial artery
5
1
pulmonary artery
2
ascending aorta
1
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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