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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
6
single cell RNA-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
9
Transcription
3
3D chromatin structure
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
6
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
Available data
177
bam
bigWig
127
bed narrowPeak
77
bigBed narrowPeak
68
tsv
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
6
tagAlign
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
80
Homo sapiens
Biosample type
63
tissue
10
cell line
7
primary cell
Organ
313
pancreas
223
kidney
217
epithelium
169
heart
122
liver
114
connective tissue
101
bone element
81
vasculature
80
blood vessel
66
adipose tissue
56
artery
55
eye
39
brain
31
limb
28
musculature of body
20
lung
16
skeleton
14
blood
14
bodily fluid
12
nerve
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
80
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
80
AMP-T2D consortium
Audit category:
1
audit script error
assay_title!
MeRIP-seq
files.file_type!
bigWig
month_released!
November, 2017
BIOSAMPLE
ASSAY
80 results
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ATAC-seq
ChIP-seq
single cell RNA-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
aorta
2
4
1
1
1
tibial artery
5
1
ascending aorta
3
1
thoracic aorta
4
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cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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