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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
124
total RNA-seq
70
ChIP-seq
49
single cell RNA-seq
10
DNase-seq
MeRIP-seq
7
WGBS
1
ATAC-seq
1
FAIRE-seq
Assay category
173
Transcription
70
DNA binding
12
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
715
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
6
November, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
257
bam
249
bigWig
168
tsv
138
fastq
75
bed narrowPeak
74
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
262
Homo sapiens
Biosample type
146
tissue
61
cell line
55
primary cell
Organ
164
pancreas
53
liver
33
epithelium
15
blood
15
bodily fluid
9
connective tissue
9
spleen
2
brain
1
adipose tissue
Project
262
AMP
Genome assembly (visualization)
249
GRCh38
241
hg19
Lab
262
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
assay_title!
MeRIP-seq
BIOSAMPLE
ASSAY
262 results
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Clear Filters
total RNA-seq
ChIP-seq
single cell RNA-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
tissue
islet of Langerhans
120
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
+ See 3 more…
cell line
HepG2
45
1
GM12878
15
primary cell
pancreatic beta cell
9
pancreatic alpha cell
7
osteoblast
4
1
1
pancreatic acinar cell
5
pancreatic cell
4
+ See 11 more…
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