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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
251
ChIP-seq
63
DNase-seq
23
total RNA-seq
8
Hi-C
6
RRBS
6
small RNA-seq
5
ATAC-seq
4
single cell RNA-seq
3
pCHi-C
1
FAIRE-seq
1
WGBS
1
snATAC-seq
Assay category
251
DNA binding
70
DNA accessibility
33
Transcription
8
3D chromatin structure
7
DNA methylation
Target of assay
218
histone
218
histone modification
128
narrow histone mark
90
broad histone mark
35
control
1
RNA binding protein
1
transcription factor
Date released
86
October, 2019
85
November, 2017
71
June, 2019
35
May, 2019
26
August, 2017
26
July, 2019
16
October, 2017
14
February, 2020
7
March, 2020
2
May, 2022
2
November, 2018
1
February, 2023
1
January, 2018
Available data
292
bam
281
bigWig
257
bed narrowPeak
168
bigBed narrowPeak
133
tagAlign
87
bed broadPeak
66
bed bed3+
65
bigBed broadPeak
35
tsv
17
fastq
5
bed bedMethyl
5
bigBed bedMethyl
2
bedpe bed3+
2
hdf5
2
hic
1
bed bed3
1
tagAlign bed3+
1
txt
Organism
372
Homo sapiens
Biosample type
347
tissue
25
primary cell
Organ
936
pancreas
791
liver
684
connective tissue
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
372
AMP
Genome assembly (visualization)
264
GRCh38
227
hg19
Lab
372
AMP-T2D consortium
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
4
missing controlled_by
assay_title!
MeRIP-seq
organ_slims!
epithelium
BIOSAMPLE
ASSAY
372 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
small RNA-seq
ATAC-seq
single cell RNA-seq
pCHi-C
FAIRE-seq
WGBS
snATAC-seq
tissue
brain
20
14
1
1
1
skeletal muscle tissue
22
1
4
1
1
1
1
layer of hippocampus
23
muscle of leg
7
13
1
caudate nucleus
15
1
1
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primary cell
skeletal muscle satellite cell
8
1
1
astrocyte of the cerebellum
3
1
1
skeletal muscle cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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