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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1009
total RNA-seq
784
ChIP-seq
177
ATAC-seq
151
DNase-seq
87
RNA microarray
81
single cell RNA-seq
26
snATAC-seq
22
pCHi-C
19
WGBS
15
small RNA-seq
13
Hi-C
10
RRBS
4
FAIRE-seq
MeRIP-seq
3
snDrop-seq
Assay category
1105
Transcription
784
DNA binding
358
DNA accessibility
29
DNA methylation
13
3D chromatin structure
Target of assay
533
histone modification
532
histone
286
narrow histone mark
246
broad histone mark
169
control
82
transcription factor
18
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
Date released
545
February, 2021
284
August, 2017
234
October, 2019
193
May, 2020
137
August, 2021
136
June, 2019
120
July, 2018
94
May, 2019
82
November, 2017
74
October, 2018
66
May, 2022
February, 2023
57
July, 2019
48
December, 2017
47
September, 2023
40
November, 2019
38
May, 2021
33
March, 2020
26
November, 2018
23
April, 2019
23
October, 2017
22
February, 2020
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
3
December, 2019
2
January, 2018
1
August, 2022
Available data
1775
bam
1615
bigWig
961
tsv
783
bed narrowPeak
473
bigBed narrowPeak
377
fastq
238
tagAlign
186
bed broadPeak
178
bed bed3+
153
txt
149
bigBed broadPeak
64
xls
18
bed bedMethyl
18
bigBed bedMethyl
8
hic
7
bedpe bed3+
6
csv
1
bedpe
1
tagAlign bed3+
Organism
2392
Homo sapiens
Biosample type
2401
tissue
987
primary cell
584
cell line
377
in vitro differentiated cells
10
stem cell
Organ
546
connective tissue
487
adipose tissue
483
pancreas
361
liver
299
kidney
heart
264
brain
150
bone element
122
limb
98
blood vessel
98
vasculature
82
musculature of body
43
nerve
38
artery
25
eye
25
spleen
20
lung
18
ureter
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
epithelium
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2322
AMP
47
KPMP
19
LungMap
13
T1D
Genome assembly (visualization)
1668
GRCh38
1609
hg19
Lab
2111
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
40
Karen Mohlke, UNC
34
Kyle Gaulton, UCSD
19
Xin Sun, UCSD
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
91
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
26
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_title!
MeRIP-seq
organ_slims!
heart
month_released!
February, 2023
BIOSAMPLE
ASSAY
2401 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
single cell RNA-seq
snATAC-seq
pCHi-C
WGBS
small RNA-seq
Hi-C
RRBS
FAIRE-seq
snDrop-seq
tissue
islet of Langerhans
293
71
57
1
5
4
3
1
1
adipose tissue
382
2
2
1
3
liver
167
145
20
2
1
1
3
1
1
1
kidney
49
27
75
13
64
6
1
1
1
bone element
84
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