Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
81
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
60
total RNA-seq
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
163
DNA accessibility
125
Transcription
4
DNA methylation
1
3D chromatin structure
Date released
130
August, 2021
78
June, 2019
47
September, 2023
14
May, 2023
11
July, 2019
9
October, 2019
8
February, 2021
3
December, 2019
2
March, 2020
Available data
144
bed narrowPeak
92
bam
92
bigWig
80
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
302
Homo sapiens
Biosample type
272
tissue
21
primary cell
9
cell line
Organ
718
pancreas
531
connective tissue
418
adipose tissue
389
epithelium
302
kidney
259
heart
239
liver
159
bone element
134
vasculature
131
blood vessel
107
artery
68
brain
57
musculature of body
56
eye
56
limb
20
lung
18
ureter
16
skeleton
15
embryo
9
blood
9
bodily fluid
8
nerve
5
spleen
5
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
255
AMP
47
KPMP
Genome assembly (visualization)
166
GRCh38
90
hg19
Lab
142
Katalin Susztak, Upenn
111
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
7
audit script error
7
inconsistent ontology term
assay_title!
MeRIP-seq
ChIP-seq
BIOSAMPLE
ASSAY
302 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
primary cell
kidney tubule cell
3
1
epithelial cell of proximal tubule
1
1
1
kidney epithelial cell
1
1
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
cell line
HEK293T
2
RCC 7860 vector
1
1
glomerular visceral epithelial cell
1
1
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
+ See 1 more…
See all biosamples
Download