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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
ATAC-seq
10
ChIP-seq
8
DNase-seq
2
FAIRE-seq
Assay category
32
DNA accessibility
10
DNA binding
Target of assay
histone
49
histone modification
30
broad histone mark
19
narrow histone mark
10
transcription factor
6
RNA binding protein
Date released
14
September, 2018
10
October, 2018
5
August, 2017
5
September, 2017
4
June, 2019
3
November, 2018
1
October, 2019
Available data
552
bam
481
bigWig
417
tsv
371
fastq
87
bed narrowPeak
80
zippedFastqFolder
42
bigBed narrowPeak
17
bed bed3+
9
bed broadPeak
7
bedpe bed3+
7
bigBed broadPeak
7
hic
6
bed bedMethyl
6
bigBed bedMethyl
6
txt
4
tagAlign
3
cool
1
bedpe
1
hdf5
Organism
42
Homo sapiens
Biosample type
22
primary cell
19
tissue
1
cell line
Organ
323
liver
82
kidney
53
blood
53
bodily fluid
47
epithelium
42
pancreas
38
heart
36
brain
36
limb
33
musculature of body
19
connective tissue
18
ureter
17
vasculature
14
blood vessel
9
adipose tissue
7
spleen
5
artery
5
eye
3
vein
2
nerve
Project
42
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
42
AMP-T2D consortium
assay_title!
MeRIP-seq
target.investigated_as!
histone
BIOSAMPLE
ASSAY
42 results
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Clear Filters
ATAC-seq
ChIP-seq
DNase-seq
FAIRE-seq
primary cell
pancreatic beta cell
7
pancreatic alpha cell
6
pancreatic acinar cell
5
pancreatic ductal cell
4
tissue
body of pancreas
9
4
pancreas
1
2
1
islet of Langerhans
1
1
cell line
Panc1
1
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