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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
787
ChIP-seq
Assay category
787
DNA binding
238
DNA accessibility
Target of assay
403
transcription factor
379
histone
379
histone modification
235
broad histone mark
144
narrow histone mark
91
RNA binding protein
81
recombinant protein
33
chromatin remodeller
5
other context
5
other post-translational modification
Date released
312
November, 2017
97
May, 2019
64
April, 2019
63
November, 2018
58
October, 2019
45
October, 2018
36
December, 2017
32
August, 2017
30
December, 2018
23
June, 2019
21
January, 2019
6
October, 2017
Available data
1432
bam
1275
bigWig
1215
bed narrowPeak
787
bigBed narrowPeak
737
fastq
358
tagAlign
114
bed broadPeak
79
bigBed broadPeak
34
bed bed3+
3
tar
1
tagAlign bed3+
Organism
781
Homo sapiens
Biosample type
377
tissue
353
cell line
57
primary cell
in vitro differentiated cells
Organ
338
liver
94
brain
71
vasculature
69
blood vessel
64
heart
59
pancreas
54
blood
54
bodily fluid
48
limb
24
kidney
24
nerve
22
epithelium
21
artery
15
connective tissue
14
musculature of body
12
spleen
10
vein
6
adipose tissue
2
eye
Project
787
AMP
Genome assembly (visualization)
753
GRCh38
731
hg19
Lab
787
AMP-T2D consortium
Audit category:
28
inconsistent control
20
inconsistent ontology term
Audit category:
15
missing controlled_by
Audit category:
31
inconsistent control read length
9
inconsistent control run_type
3
inconsistent assembly
assay_title!
RNA microarray
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
787 results
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Clear Filters
ChIP-seq
tissue
liver
38
heart left ventricle
28
body of pancreas
26
tibial nerve
24
kidney
18
+ See 27 more…
cell line
HepG2
293
GM12878
54
Panc1
6
primary cell
skeletal muscle myoblast
14
endothelial cell of umbilical vein
10
skeletal muscle satellite cell
7
mesenchymal stem cell
6
kidney epithelial cell
4
+ See 8 more…
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