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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1167
total RNA-seq
1105
ChIP-seq
302
ATAC-seq
182
single cell RNA-seq
179
DNase-seq
RNA microarray
30
pCHi-C
28
snATAC-seq
27
WGBS
20
Hi-C
16
small RNA-seq
11
RRBS
FAIRE-seq
4
GRO-seq
4
MeRIP-seq
3
snDrop-seq
2
Capture-C
Assay category
1365
Transcription
1105
DNA binding
509
DNA accessibility
38
DNA methylation
20
3D chromatin structure
Target of assay
740
histone modification
739
histone
379
narrow histone mark
359
broad histone mark
224
control
143
transcription factor
39
RNA binding protein
5
chromatin remodeller
3
other context
3
other post-translational modification
2
nucleotide modification
Date released
487
February, 2021
351
August, 2017
270
August, 2021
250
October, 2019
193
May, 2020
172
May, 2021
163
June, 2019
120
July, 2018
115
May, 2019
111
February, 2023
91
December, 2017
82
November, 2017
80
April, 2019
75
July, 2019
74
October, 2018
66
May, 2022
48
March, 2020
47
September, 2023
45
November, 2019
40
May, 2024
39
February, 2018
25
February, 2020
25
November, 2018
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
January, 2018
6
September, 2017
5
March, 2019
4
November, 2020
3
December, 2019
1
August, 2018
1
August, 2022
Available data
2194
bam
2027
bigWig
1205
tsv
1112
bed narrowPeak
574
bigBed narrowPeak
516
fastq
278
tagAlign
230
bed bed3+
214
bed broadPeak
177
bigBed broadPeak
76
txt
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
17
bedpe bed3+
15
hic
10
bed bed3
7
bed bedgraph
6
csv
2
ibed
1
bedpe
1
tagAlign bed3+
Organism
3072
Homo sapiens
Biosample type
2686
tissue
1087
primary cell
662
cell line
394
in vitro differentiated cells
10
stem cell
Organ
643
connective tissue
506
pancreas
488
adipose tissue
376
liver
314
heart
296
kidney
264
brain
133
blood vessel
133
vasculature
122
limb
82
musculature of body
74
bone element
73
artery
56
eye
43
nerve
38
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2983
AMP
47
KPMP
31
T1D
19
LungMap
Genome assembly (visualization)
2124
GRCh38
2048
hg19
4
hg18
Lab
2674
AMP-T2D consortium
142
Katalin Susztak, Upenn
99
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
40
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
7
Struan F.A. Grant, CHOP
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
122
inconsistent ontology term
27
inconsistent control
9
audit script error
Audit category:
32
missing controlled_by
Audit category:
23
inconsistent control read length
1
inconsistent assembly
assay_title!
RNA microarray
FAIRE-seq
BIOSAMPLE
ASSAY
3080 results
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total RNA-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
DNase-seq
pCHi-C
snATAC-seq
WGBS
Hi-C
small RNA-seq
RRBS
GRO-seq
MeRIP-seq
snDrop-seq
Capture-C
tissue
islet of Langerhans
292
71
68
6
1
4
7
3
1
4
adipose tissue
382
2
3
1
3
liver
167
145
20
1
2
1
3
1
1
1
kidney
49
27
75
64
13
6
1
1
heart left ventricle
3
35
2
18
3
1
4
1
1
+ See 173 more…
in vitro differentiated cells
adipocyte
5
67
8
1
1
cardiomyocytes
59
3
embryonic stem cell
7
40
6
1
neural progenitor cell
7
21
10
pancreatic endoderm
4
18
1
+ See 31 more…
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