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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
Hi-C
Assay category
18
3D chromatin structure
Date released
9
March, 2020
3
October, 2019
2
August, 2021
2
November, 2019
1
March, 2019
1
March, 2023
Available data
3372
bam
3154
bigWig
1804
bed narrowPeak
1591
tsv
1331
fastq
1029
bigBed narrowPeak
398
tagAlign
318
bed broadPeak
281
bigBed broadPeak
270
bed bed3+
153
zippedFastqFolder
71
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
19
bedpe bed3+
18
hic
12
bed bed3
7
bed bedgraph
5
hdf5
3
csv
3
tar
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
18
Homo sapiens
Biosample type
11
tissue
4
in vitro differentiated cells
2
cell line
1
primary cell
Organ
4
pancreas
3
heart
2
blood vessel
2
epithelium
2
liver
2
musculature of body
2
vasculature
1
kidney
vein
Project
17
AMP
1
ITG
Genome assembly (visualization)
17
hg19
1
GRCh38
Lab
14
AMP-T2D consortium
2
Bing Ren, UCSD
1
ITG
1
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
audit script error
assay_title!
RNA microarray
audit.ERROR.category!
audit script error
organ_slims!
vein
BIOSAMPLE
ASSAY
18 results
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Hi-C
tissue
islet of Langerhans
2
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
+ See 4 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cardiac precursors (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
cell line
EndoC_BH1
1
HepG2
1
primary cell
chondrocytes
1
See all biosamples
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