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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
59
total RNA-seq
13
single cell RNA-seq
1
ATAC-seq
1
MPRA
1
snATAC-seq
Assay category
72
Transcription
2
DNA accessibility
Date released
57
August, 2021
7
May, 2022
5
February, 2021
5
February, 2023
1
October, 2022
Available data
3389
bam
3165
bigWig
bed narrowPeak
1598
tsv
1355
fastq
1039
bigBed narrowPeak
396
tagAlign
320
bed broadPeak
284
bigBed broadPeak
272
bed bed3+
153
zippedFastqFolder
77
txt
64
xls
36
bed bedMethyl
36
bigBed bedMethyl
23
bedpe bed3+
23
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
74
Homo sapiens
Biosample type
73
tissue
1
cell line
1
in vitro differentiated cells
Organ
62
kidney
6
pancreas
4
bone element
4
skeleton
1
musculature of body
Project
75
AMP
Genome assembly (visualization)
2
hg19
Lab
57
Katalin Susztak, Upenn
11
AMP-T2D consortium
6
Kyle Gaulton, UCSD
1
Struan F.A. Grant, CHOP
Audit category:
6
audit script error
assay_title!
RNA microarray
audit.WARNING.category!
inconsistent assembly
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
single cell RNA-seq
ATAC-seq
MPRA
snATAC-seq
tissue
kidney
49
13
islet of Langerhans
6
acetabular part of hip bone
1
ilium
1
ischium
1
+ See 2 more…
cell line
MIN6
1
in vitro differentiated cells
Progenitor cell of Hypothalamus (neural progenitor cell)
1
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