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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
ChIP-seq
30
DNase-seq
Assay category
78
DNA binding
30
DNA accessibility
Target of assay
49
transcription factor
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
64
November, 2017
24
June, 2019
14
August, 2017
5
October, 2019
1
November, 2020
Available data
1483
bam
1394
bigWig
979
fastq
831
bed narrowPeak
524
tsv
479
bigBed narrowPeak
159
tagAlign
153
zippedFastqFolder
108
bed broadPeak
108
bigBed broadPeak
67
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
4
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
108
Homo sapiens
Biosample type
tissue
59
cell line
48
primary cell
1
in vitro differentiated cells
Organ
60
liver
22
epithelium
12
vasculature
11
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
108
AMP
Genome assembly (visualization)
101
hg19
90
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
inconsistent assembly
assay_title!
RNA microarray
audit.WARNING.category!
inconsistent assembly
biosample_type!
tissue
BIOSAMPLE
ASSAY
108 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
12
1
endothelial cell of umbilical vein
2
2
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
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in vitro differentiated cells
adipocyte
1
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