Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
52
single cell RNA-seq
21
snATAC-seq
2
pCHi-C
Assay category
52
Transcription
21
DNA accessibility
Date released
54
May, 2022
19
September, 2020
2
March, 2020
Available data
2701
bam
2544
bigWig
1601
bed narrowPeak
1181
tsv
949
bigBed narrowPeak
885
fastq
378
tagAlign
300
bed broadPeak
277
bigBed broadPeak
244
bed bed3+
73
zippedFastqFolder
71
txt
64
xls
30
bed bedMethyl
30
bigBed bedMethyl
16
bedpe bed3+
16
hic
12
bed bed3
8
csv
7
bed bedgraph
4
hdf5
4
tar
2
ibed
1
tagAlign bed3+
1
vcf
Organism
75
Homo sapiens
Biosample type
73
primary cell
2
in vitro differentiated cells
Organ
80
epithelium
pancreas
Project
73
HPAP
2
AMP
Genome assembly (visualization)
2
hg19
Lab
73
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assay_title!
RNA microarray
audit.WARNING.category!
inconsistent assembly
organ_slims!
pancreas
BIOSAMPLE
ASSAY
75 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
snATAC-seq
pCHi-C
primary cell
Langerhans cell
52
21
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
1
lymphocyte of B lineage (iPSC)
1
Download