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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
snATAC-seq
7
single cell RNA-seq
RNA microarray
1
Hi-C
Assay category
29
DNA accessibility
7
Transcription
1
3D chromatin structure
Date released
32
February, 2021
2
December, 2019
1
August, 2022
1
May, 2022
1
October, 2019
Available data
27
fastq
7
tsv
6
txt
5
csv
4
hic
3
bedpe bed3+
cool
1
bed bed3+
Organism
37
Homo sapiens
Biosample type
28
primary cell
7
tissue
2
in vitro differentiated cells
Organ
5
kidney
1
blood vessel
1
epithelium
1
musculature of body
1
pancreas
1
vasculature
1
vein
Project
27
HPAP
10
AMP
Genome assembly (visualization)
2
hg19
Lab
27
Klaus Kaestner, Upenn
10
AMP-T2D consortium
Audit category:
269
inconsistent ontology term
37
audit script error
28
inconsistent control
1
inconsistent replicate
assay_title!
RNA microarray
audit.WARNING.category!
inconsistent control run_type
files.file_type!
cool
BIOSAMPLE
ASSAY
37 results
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snATAC-seq
single cell RNA-seq
Hi-C
primary cell
Langerhans cell
27
endothelial cell of umbilical vein
1
tissue
kidney
5
islet of Langerhans
1
skeletal muscle tissue
1
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
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