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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
512
Transcription
443
DNA accessibility
79
DNA methylation
61
DNA binding
34
3D chromatin structure
1
DNA sequencing
Target of assay
232
histone
histone modification
123
broad histone mark
109
narrow histone mark
32
control
29
transcription factor
11
RNA binding protein
Date released
20
May, 2021
19
August, 2017
15
August, 2021
5
May, 2024
1
November, 2017
1
October, 2017
Available data
bam
627
fastq
521
bigWig
474
bed narrowPeak
410
bigBed narrowPeak
77
tagAlign
49
bed broadPeak
49
bigBed broadPeak
28
bed bed3+
3
tar
Organism
61
Homo sapiens
Biosample type
23
tissue
19
in vitro differentiated cells
16
cell line
3
primary cell
Organ
19
liver
7
connective tissue
6
pancreas
5
adipose tissue
5
heart
3
musculature of body
1
brain
Project
61
AMP
Genome assembly (visualization)
14
hg19
5
GRCh38
Lab
21
AMP-T2D consortium
20
Kyle Gaulton, UCSD
15
Bing Ren, UCSD
5
Patrick T. Ellinor, Broad
assay_title!
RNA microarray
files.file_type!
bam
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
tissue
islet of Langerhans
6
left cardiac atrium
5
subcutaneous abdominal adipose tissue
5
liver
3
skeletal muscle tissue
3
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in vitro differentiated cells
embryonic stem cell
17
adipocyte
2
cell line
HepG2
16
primary cell
CD8-positive, alpha-beta T cell
3
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