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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ATAC-seq
55
total RNA-seq
47
WGBS
6
MeRIP-seq
6
RRBS
3
Hi-C
2
Capture-C
2
DNase-seq
1
CRISPR genome editing followed by sgRNA sequencing
RNA microarray
Assay category
81
DNA accessibility
55
Transcription
53
DNA methylation
3
3D chromatin structure
Target of assay
3
control
3
nucleotide modification
Date released
80
May, 2022
52
February, 2023
19
September, 2020
16
May, 2021
8
July, 2019
7
August, 2020
6
February, 2021
6
November, 2020
3
October, 2019
2
August, 2021
2
March, 2020
Available data
bam
301
bigWig
257
fastq
155
tsv
151
bed narrowPeak
80
zippedFastqFolder
76
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
7
tagAlign
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
bedpe bed3+
3
cool
2
hdf5
1
tar
Organism
200
Homo sapiens
Biosample type
160
primary cell
27
cell line
14
tissue
Organ
250
pancreas
208
kidney
201
epithelium
179
heart
108
liver
89
connective tissue
54
eye
49
vasculature
48
blood vessel
47
adipose tissue
43
brain
39
artery
37
musculature of body
20
lung
9
blood
9
bodily fluid
9
bone element
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
1
vein
Project
149
HPAP
52
AMP
Genome assembly (visualization)
23
hg19
10
GRCh38
Lab
149
Klaus Kaestner, Upenn
46
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
27
inconsistent ontology term
1
audit script error
assay_title!
RNA microarray
files.file_type!
bedpe bed3+
bam
BIOSAMPLE
ASSAY
201 results
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ATAC-seq
total RNA-seq
WGBS
MeRIP-seq
RRBS
Hi-C
Capture-C
DNase-seq
CRISPR genome editing followed by sgRNA sequencing
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
+ See 9 more…
cell line
EndoC_BH1
18
6
2
1
tissue
pigmented layer of retina
12
2
See all biosamples
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