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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
RNA microarray
62
total RNA-seq
17
ChIP-seq
12
ATAC-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
1
pCHi-C
Assay category
62
Transcription
17
DNA binding
15
DNA accessibility
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
66
February, 2021
21
October, 2019
8
February, 2023
1
May, 2021
Available data
86
bam
73
bigWig
58
tsv
21
bed narrowPeak
13
bigBed narrowPeak
4
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
bedpe bed3+
1
tar
Organism
96
Homo sapiens
Biosample type
74
tissue
22
primary cell
Organ
939
pancreas
789
liver
682
connective tissue
518
epithelium
489
adipose tissue
390
heart
352
kidney
286
brain
234
vasculature
228
blood vessel
141
artery
122
limb
94
musculature of body
75
bone element
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
95
AMP
1
T1D
Genome assembly (visualization)
86
hg19
78
GRCh38
Lab
95
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
audit script error
assay_title!
RNA microarray
files.file_type!
bedpe bed3+
BIOSAMPLE
ASSAY
96 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
FAIRE-seq
Hi-C
pCHi-C
tissue
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
pubis
1
1
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primary cell
endothelial cell of umbilical vein
17
2
1
1
megakaryocyte
1
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