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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
65
ChIP-seq
Assay category
DNA accessibility
65
DNA binding
Target of assay
65
histone
65
histone modification
transcription factor
36
broad histone mark
29
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
37
August, 2017
23
November, 2017
3
October, 2017
2
October, 2019
Available data
2518
bam
2323
bigWig
1584
tsv
856
bed narrowPeak
802
fastq
396
bigBed narrowPeak
389
tagAlign
93
zippedFastqFolder
73
txt
65
bed broadPeak
45
bed bed3+
36
bed bedMethyl
36
bigBed bedMethyl
30
bigBed broadPeak
23
bedpe bed3+
23
hic
8
csv
5
hdf5
3
cool
2
ibed
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
59
Homo sapiens
Biosample type
35
tissue
16
primary cell
14
cell line
Organ
14
liver
13
musculature of body
12
brain
12
pancreas
4
epithelium
4
vasculature
3
blood vessel
2
vein
1
adipose tissue
1
connective tissue
Project
65
AMP
Genome assembly (visualization)
65
hg19
40
GRCh38
Lab
65
AMP-T2D consortium
Audit category:
2
missing controlled_by
Audit category:
11
inconsistent control read length
2
inconsistent assembly
assay_title!
RNA microarray
assay_slims!
DNA accessibility
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
65 results
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ChIP-seq
tissue
skeletal muscle tissue
13
islet of Langerhans
6
pancreas
6
brain
3
cingulate gyrus
2
+ See 4 more…
primary cell
skeletal muscle myoblast
11
endothelial cell of umbilical vein
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
cell line
HepG2
14
See all biosamples
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