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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
286
total RNA-seq
188
ATAC-seq
152
single cell RNA-seq
128
ChIP-seq
82
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
8
Hi-C
5
STARR-seq
3
CRISPR genome editing followed by DNA sequencing
2
Capture-C
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
128
DNA binding
Target of assay
88
histone
88
histone modification
51
broad histone mark
37
narrow histone mark
28
transcription factor
12
control
11
RNA binding protein
Date released
70
May, 2021
40
May, 2024
18
August, 2021
Available data
171
bigWig
168
bed narrowPeak
84
bam
tagAlign
Organism
128
Homo sapiens
Biosample type
40
tissue
37
in vitro differentiated cells
33
primary cell
18
cell line
Organ
40
heart
18
liver
Project
128
AMP
Genome assembly (visualization)
47
hg19
40
GRCh38
Lab
AMP-T2D consortium
70
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
18
Bing Ren, UCSD
assay_title!
RNA microarray
lab.title!
AMP-T2D consortium
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
128 results
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ChIP-seq
tissue
left cardiac atrium
40
in vitro differentiated cells
embryonic stem cell
37
primary cell
CD8-positive, alpha-beta T cell
33
cell line
HepG2
18
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