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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
227
total RNA-seq
194
ChIP-seq
144
single cell RNA-seq
122
ATAC-seq
76
snATAC-seq
47
WGBS
17
pCHi-C
10
MeRIP-seq
5
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
194
DNA binding
Target of assay
169
histone
169
histone modification
94
broad histone mark
75
narrow histone mark
17
transcription factor
10
RNA binding protein
8
control
Date released
154
May, 2021
40
May, 2024
August, 2021
Available data
157
bigWig
154
bed narrowPeak
84
bam
84
tagAlign
Organism
194
Homo sapiens
Biosample type
117
primary cell
40
tissue
37
in vitro differentiated cells
Organ
40
heart
Project
110
AMP
84
T1D
Genome assembly (visualization)
124
GRCh38
117
hg19
Lab
AMP-T2D consortium
154
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
assay_title!
RNA microarray
lab.title!
AMP-T2D consortium
month_released!
August, 2021
BIOSAMPLE
ASSAY
194 results
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ChIP-seq
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
33
tissue
left cardiac atrium
40
in vitro differentiated cells
embryonic stem cell
37
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