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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
102
total RNA-seq
84
ChIP-seq
19
ATAC-seq
1
Hi-C
Assay category
102
Transcription
84
DNA binding
19
DNA accessibility
1
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
135
May, 2021
45
May, 2020
24
May, 2022
2
March, 2019
Available data
310
bigWig
274
bed narrowPeak
205
bam
195
fastq
153
zippedFastqFolder
112
tsv
84
tagAlign
66
txt
64
xls
7
hic
5
bedpe bed3+
4
bed bed3+
3
bed bedgraph
3
cool
2
bed broadPeak
1
bedpe
1
vcf
Organism
206
Homo sapiens
Biosample type
180
primary cell
26
tissue
Organ
26
pancreas
Project
180
T1D
26
AMP
Genome assembly (visualization)
199
hg19
180
GRCh38
Lab
AMP-T2D consortium
204
Kyle Gaulton, UCSD
1
Bing Ren, UCSD
1
Mark McCarthy, Oxford
Audit category:
4
inconsistent ontology term
assay_title!
RNA microarray
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
206 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
primary cell
monocyte
53
84
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
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tissue
islet of Langerhans
6
19
1
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