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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
158
ATAC-seq
115
total RNA-seq
58
single cell RNA-seq
47
WGBS
16
snATAC-seq
10
MeRIP-seq
6
Hi-C
2
STARR-seq
Assay category
174
DNA accessibility
173
Transcription
47
DNA methylation
6
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
132
August, 2021
104
May, 2022
55
February, 2023
47
September, 2023
19
September, 2020
14
May, 2023
10
November, 2020
8
January, 2021
7
August, 2020
6
February, 2021
5
March, 2019
3
October, 2022
1
May, 2021
1
October, 2017
Available data
95
fastq
82
bed narrowPeak
80
zippedFastqFolder
64
xls
63
txt
25
bam
11
bigWig
7
tsv
5
hic
4
bedpe bed3+
3
cool
2
bed broadPeak
1
bedpe
Organism
412
Homo sapiens
Biosample type
252
tissue
152
primary cell
8
cell line
Organ
221
pancreas
191
kidney
158
epithelium
71
liver
40
heart
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
187
AMP
152
HPAP
47
KPMP
26
T1D
Genome assembly (visualization)
88
GRCh38
26
hg19
Lab
AMP-T2D consortium
152
Klaus Kaestner, Upenn
142
Katalin Susztak, Upenn
51
Kyle Gaulton, UCSD
47
KPMP
10
Rohit N. Kulkarni, M.D., Ph.D.
6
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
3
audit script error
assay_title!
RNA microarray
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
412 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
WGBS
snATAC-seq
MeRIP-seq
Hi-C
STARR-seq
tissue
kidney
75
49
58
6
1
islet of Langerhans
34
12
6
4
2
pancreas
1
4
primary cell
pancreatic alpha cell
29
42
31
1
pancreatic beta cell
16
11
16
1
pancreatic acinar cell
4
1
cell line
EndoC_BH1
6
HEK293T
2
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